Details of experiments between Q9Q6P4 and Q5TCQ9
Note that the results of all experiments are listed, regardless of the modification states of the fragments.
Experiment series 1
Protein A protein: WNV-NS5
Protein A fragment: 3424-3433
Protein A site: PBM
Protein A sequence: DTTLVEDTVL
Protein A construct: biotin-(PEG)3-RYEDTTLVEDTVL
Protein B protein: MAGI3
Protein B fragment: 398-503
Protein B site: PDZ_2
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.61
Holdup BI standard deviation: 0.06
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
PUBMED ID of publication: 36115835
Number of measurements: 2
Measured pKd: 5
Experiment series 2
Protein A protein: WNV-NS5
Protein A fragment: 3424-3433
Protein A site: PBM
Protein A sequence: DTTLVEDTVL
Protein A construct: biotin-(PEG)3-RYEDTTLVEDTVL
Protein B protein: MAGI3
Protein B fragment: 1-114
Protein B site: PDZ_1
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: -0.02
Holdup BI standard deviation: 0.03
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
PUBMED ID of publication: 36115835
Number of measurements: 4
The affinity was below the detection threshold of the assay.
Experiment series 3
Protein A protein: WNV-NS5
Protein A fragment: 3424-3433
Protein A site: PBM
Protein A sequence: DTTLVEDTVL
Protein A construct: biotin-(PEG)3-RYEDTTLVEDTVL
Protein B protein: MAGI3
Protein B fragment: 572-655
Protein B site: PDZ_3
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: -0.04
Holdup BI standard deviation: 0.09
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
PUBMED ID of publication: 36115835
Number of measurements: 5
The affinity was below the detection threshold of the assay.
Experiment series 4
Protein A protein: WNV-NS5
Protein A fragment: 3424-3433
Protein A site: PBM
Protein A sequence: DTTLVEDTVL
Protein A construct: biotin-(PEG)3-RYEDTTLVEDTVL
Protein B protein: MAGI3
Protein B fragment: 716-815
Protein B site: PDZ_4
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: -0.06
Holdup BI standard deviation: 0.07
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
PUBMED ID of publication: 36115835
Number of measurements: 5
The affinity was below the detection threshold of the assay.
Experiment series 5
Protein A protein: WNV-NS5
Protein A fragment: 3424-3433
Protein A site: PBM
Protein A sequence: DTTLVEDTVL
Protein A construct: biotin-(PEG)3-RYEDTTLVEDTVL
Protein B protein: MAGI3
Protein B fragment: 847-941
Protein B site: PDZ_5
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.05
Holdup BI standard deviation: 0.06
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
PUBMED ID of publication: 36115835
Number of measurements: 5
The affinity was below the detection threshold of the assay.
Experiment series 6
Protein A protein: WNV-NS5
Protein A fragment: 3424-3433
Protein A site: PBM
Protein A sequence: DTTLVEDTVL
Protein A construct: biotin-(PEG)3-RYEDTTLVEDTVL
Protein B protein: MAGI3
Protein B fragment: 1014-1103
Protein B site: PDZ_6
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.03
Holdup BI standard deviation: 0.1
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: CALIP_holdup
Details of affinity fitting: BSA and lysozyme internal standards + bacterial cell lysate + normal layout
PUBMED ID of publication: 36115835
Number of measurements: 5
The affinity was below the detection threshold of the assay.
Experiment series 7
Protein A protein: WNV-NS5
Protein A fragment: 3424-3433
Protein A site: PBM
Protein A sequence: DTTLVEDTVL
Protein A construct: biotin-(PEG)3-RYEDTTLVEDTVL
Protein B protein: MAGI3
Protein B fragment: 398-503
Protein B site: PDZ_2
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.05
Normalized holdup BI: 0.05
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
PUBMED ID of publication: 36115835
Number of measurements: 1
Measured pKd: 3.5