Details of experiments between Q9H5P4 and Q96KB5
Note that the results of all experiments are listed, regardless of the modification states of the fragments.
Experiment series 1
Protein A protein: PDZD7
Protein A fragment: 858-953
Protein A site: PDZ_3
Protein A construct: his6-MBP-TEVsite-PDZ
Protein B protein: PBK
Protein B fragment: 313-322
Protein B site: PBM
Protein B sequence: HIVEALETDV
Protein B construct: biotin-ttds-HIVEALETDV
Average holdup BI: 0.29
Immobilized partner concentration in holdup experiment (10-6M): 5.5
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
PUBMED ID of publication: 36115835
Number of measurements: 1
Measured pKd: 4.98
Experiment series 2
Protein A protein: PDZD7
Protein A fragment: 82-170
Protein A site: PDZ_1
Protein A construct: his6-MBP-TEVsite-PDZ
Protein B protein: PBK
Protein B fragment: 313-322
Protein B site: PBM
Protein B sequence: HIVEALETDV
Protein B construct: biotin-ttds-HIVEALETDV
Average holdup BI: -0.08
Immobilized partner concentration in holdup experiment (10-6M): 5.5
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
PUBMED ID of publication: 36115835
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 3
Protein A protein: PDZD7
Protein A fragment: 199-313
Protein A site: PDZ_2
Protein A construct: his6-MBP-TEVsite-PDZ
Protein B protein: PBK
Protein B fragment: 313-322
Protein B site: PBM
Protein B sequence: HIVEALETDV
Protein B construct: biotin-ttds-HIVEALETDV
Average holdup BI: 0.02
Immobilized partner concentration in holdup experiment (10-6M): 5.5
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
PUBMED ID of publication: 36115835
Number of measurements: 1
The affinity was below the detection threshold of the assay.
Experiment series 4
Protein A protein: PDZD7
Protein A fragment: 858-953
Protein A site: PDZ_3
Protein A construct: his6-MBP-TEVsite-PDZ
Protein B protein: PBK
Protein B fragment: 313-322
Protein B site: PBM
Protein B sequence: HIVEALETDV
Protein B construct: biotin-ttds-HIVEALETDV
Average holdup BI: 0.23
Normalized holdup BI: 0.29
Immobilized partner concentration in holdup experiment (10-6M): 11.6
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
PUBMED ID of publication: 36115835
Number of measurements: 1
Measured pKd: 4.6