Details of experiments between Q8TBB1 and Q9NYF0
Note that the results of all experiments are listed, regardless of the modification states of the fragments.
Experiment series 1
Protein A protein: LNX1
Protein A fragment: 261-371
Protein A site: PDZ_1
Protein A construct: his6-MBP-TEVsite-PDZ
Protein B protein: DACT1
Protein B fragment: 827-836
Protein B site: PBM
Protein B sequence: SGSLKLMTTV
Protein B construct: biotin-ado-ado-SGSLKLMTTV
Average holdup BI: 0.1
Normalized holdup BI: 0.16
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Experimental details: Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality causing a systematic error in reported affinities.
PUBMED ID of publication: 36115835
Number of measurements: 1
Measured pKd: 4.04
Experiment series 2
Protein A protein: LNX1
Protein A fragment: 371-470
Protein A site: PDZ_2
Protein A construct: his6-MBP-TEVsite-PDZ
Protein B protein: DACT1
Protein B fragment: 827-836
Protein B site: PBM
Protein B sequence: SGSLKLMTTV
Protein B construct: biotin-ado-ado-SGSLKLMTTV
Average holdup BI: 0.11
Normalized holdup BI: 0.11
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Experimental details: Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality causing a systematic error in reported affinities.
PUBMED ID of publication: 36115835
Number of measurements: 1
Measured pKd: 3.84
Experiment series 3
Protein A protein: LNX1
Protein A fragment: 500-596
Protein A site: PDZ_3
Protein A construct: his6-MBP-TEVsite-PDZ
Protein B protein: DACT1
Protein B fragment: 827-836
Protein B site: PBM
Protein B sequence: SGSLKLMTTV
Protein B construct: biotin-ado-ado-SGSLKLMTTV
Average holdup BI: -0
Normalized holdup BI: -0
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Experimental details: Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality causing a systematic error in reported affinities.
PUBMED ID of publication: 36115835
Number of measurements: 1
The affinity was below the detection threshold of the assay.