Details of experiments between P78352 and O15427
Note that the results of all experiments are listed, regardless of the modification states of the fragments.
Experiment series 1
Protein A protein: DLG4
Protein A fragment: 155-249
Protein A site: PDZ_2
Protein A construct: his6-MBP-TEVsite-PDZ
Protein B protein: SLC16A3
Protein B fragment: 456-465
Protein B site: PBM
Protein B sequence: EVVHTPETSV
Protein B construct: biotin-ttds-EVVHTPETSV
Average holdup BI: 0.17
Normalized holdup BI: 0.22
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
PUBMED ID of publication: 36115835
Number of measurements: 1
Measured pKd: 4.2
Experiment series 2
Protein A protein: DLG4
Protein A fragment: 306-403
Protein A site: PDZ_3
Protein A construct: his6-MBP-TEVsite-PDZ
Protein B protein: SLC16A3
Protein B fragment: 456-465
Protein B site: PBM
Protein B sequence: EVVHTPETSV
Protein B construct: biotin-ttds-EVVHTPETSV
Average holdup BI: 0.11
Holdup BI standard deviation: 0.03
Normalized holdup BI: 0.13
Normalized holdup BI standard deviation: 0.03
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
PUBMED ID of publication: 36115835
Number of measurements: 2
Measured pKd: 3.94
Experiment series 3
Protein A protein: DLG4
Protein A fragment: 62-152
Protein A site: PDZ_1
Protein A construct: his6-MBP-TEVsite-PDZ
Protein B protein: SLC16A3
Protein B fragment: 456-465
Protein B site: PBM
Protein B sequence: EVVHTPETSV
Protein B construct: biotin-ttds-EVVHTPETSV
Average holdup BI: 0.1
Normalized holdup BI: 0.12
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
PUBMED ID of publication: 36115835
Number of measurements: 1
Measured pKd: 3.9