Details of experiments between the fragments P12931~527-536 and O00151~1-87
Note that the results of all experiments are listed, regardless of the modification states of the fragments.
Experiment series 1
Protein A protein: SRC
Protein A fragment: 527-536
Protein A site: PBM
Protein A sequence: EPQYQPGENL
Protein A construct: biotin-ado-ado-EPQYQPGENL
Protein B protein: PDLIM1
Protein B fragment: 1-87
Protein B site: PDZ
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.06
Normalized holdup BI: 0.06
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Experimental details: Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality causing a systematic error in reported affinities.
PUBMED ID of publication: 36115835
Number of measurements: 1
Measured pKd: 3.56