Details of experiments between the fragments P04921~119-128 and O75970~688-793
Note that the results of all experiments are listed, regardless of the modification states of the fragments.
Experiment series 1
Protein A protein: GYPC
Protein A fragment: 119-128
Protein A site: PBM
Protein A sequence: GDSSRKEYFI
Protein A construct: biotin-ado-ado-GDSSRKEYFI
Protein B protein: MPDZ
Protein B fragment: 688-793
Protein B site: PDZ_5
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.43
Normalized holdup BI: 0.43
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Experimental details: Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality causing a systematic error in reported affinities.
PUBMED ID of publication: 36115835
Number of measurements: 1
Measured pKd: 4.66