Details of experiments between P00519 and P49790
Note that the results of all experiments are listed, regardless of the modification states of the fragments.
Experiment series 1
Protein A protein: ABL1
Protein A fragment: 56-121
Protein A site: SH3
Protein A construct: avi(biotin)-his6-MBP-TEVsite-SH3
Protein B protein: NUP153
Protein B fragment: 1-1475
Protein B construct: endogenous protein (Jurkat)
Average holdup BI: 0.01
Immobilized partner concentration in holdup experiment (10-6M): 10
P value (usually -log10(P Two-sided unpaired T-test), but double check the experimental details): 0.48
Experiment method: nHU_Jurkat
Details of affinity fitting: hyperbolic binding equation
Date of measurement: 2022.06.29.
Experimental details: -log10(P Two-sided unpaired T-test (6 vs 3))
Number of measurements: 3
The affinity was below the detection threshold of the assay.
Experiment series 2
Protein A protein: ABL1
Protein A fragment: 56-121
Protein A site: SH3
Protein A construct: his6-MBP-TEVsite-SH3
Protein B protein: NUP153
Protein B fragment: 252-266
Protein B site: PxxP_1
Protein B sequence: SQLGDSPFYPGKTTY
Protein B construct: Bio Ado Ado-SQLGDSPFYPGKTTY-CONH2
Average holdup BI: 0.05
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: HU (DAPF)
Details of affinity fitting: Quadratic binding equation
Date of measurement: 2023/01/18
Number of measurements: 1
Measured pKd: 3.5