Details of experiments between the fragments O95477~2252-2261 and Q96L92~40-141
Note that the results of all experiments are listed, regardless of the modification states of the fragments.
Experiment series 1
Protein A protein: ABCA1
Protein A fragment: 2252-2261
Protein A site: PBM
Protein A sequence: QDEKVKESYV
Protein A construct: Biotin-Ahx-QDEKVKESYV
Protein B protein: SNX27
Protein B fragment: 40-141
Protein B site: PDZ
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.78
Holdup BI standard deviation: 0.04
Normalized holdup BI: 0.86
Normalized holdup BI standard deviation: 0.05
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
PUBMED ID of publication: 36115835
Number of measurements: 2
Measured pKd: 5.63
Experiment series 2
Protein A protein: ABCA1
Protein A fragment: 2252-2261
Protein A site: PBM
Protein A sequence: QDEKVKESYV
Protein A construct: Biotin-ado-ado-QDEKVKESYV
Protein B protein: SNX27
Protein B fragment: 40-141
Protein B site: PDZ
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.89
Normalized holdup BI: 0.89
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Experimental details: Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
PUBMED ID of publication: 36115835
Number of measurements: 1
Measured pKd: 5.73