Details of experiments between the fragments O15439~1316-1325 and P57105~6-103
Note that the results of all experiments are listed, regardless of the modification states of the fragments.
Experiment series 1
Protein A protein: ABCC4
Protein A fragment: 1316-1325
Protein A site: PBM
Protein A sequence: STLTIFETAL
Protein A construct: biotin-ttds-STLTIFETAL
Protein B protein: SYNJ2BP
Protein B fragment: 6-103
Protein B site: PDZ
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.61
Immobilized partner concentration in holdup experiment (10-6M): 10
Experiment method: SAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normal layout
PUBMED ID of publication: 36115835
Number of measurements: 1
Measured pKd: 5.32
Experiment series 2
Protein A protein: ABCC4
Protein A fragment: 1316-1325
Protein A site: PBM
Protein A sequence: STLTIFETAL
Protein A construct: biotin-ttds-STLTIFETAL
Protein B protein: SYNJ2BP
Protein B fragment: 6-103
Protein B site: PDZ
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.7
Holdup BI standard deviation: 0.03
Normalized holdup BI: 0.84
Normalized holdup BI standard deviation: 0.03
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
PUBMED ID of publication: 36115835
Number of measurements: 3
Measured pKd: 5.56
Experiment series 3
Protein A protein: ABCC4
Protein A fragment: 1316-1325
Protein A site: PBM
Protein A sequence: STLTIFETAL
Protein A construct: biotin-ttds-STLTIFETAL
Protein B protein: SYNJ2BP
Protein B fragment: 6-103
Protein B site: PDZ
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.55
Normalized holdup BI: 0.69
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Experimental details: not reported internal standards of holdup layout #5
Number of measurements: 1
Measured pKd: 5.17
Experiment series 4
Protein A protein: ABCC4
Protein A fragment: 1316-1325
Protein A site: PBM
Protein A sequence: STLTIFETAL
Protein A construct: biotin-ttds-STLTIFETAL
Protein B protein: SYNJ2BP
Protein B fragment: 6-103
Protein B site: PDZ
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.64
Normalized holdup BI: 0.77
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Experimental details: not reported internal standards of holdup layout #5
Number of measurements: 1
Measured pKd: 5.34
Experiment series 5
Protein A protein: ABCC4
Protein A fragment: 1316-1325
Protein A site: PBM
Protein A sequence: STLTIFETAL
Protein A construct: Biotin-ado-ado-STLTIFETAL
Protein B protein: SYNJ2BP
Protein B fragment: 6-103
Protein B site: PDZ
Protein B construct: his6-MBP-TEVsite-PDZ
Average holdup BI: 0.74
Normalized holdup BI: 0.77
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Experimental details: Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality. Not reported internal standards of holdup layout #6
PUBMED ID of publication: 36115835
Number of measurements: 1
Measured pKd: 5.36