Details of experiments between the fragments O15085~41-126 and Q9UPU3~1213-1222
Note that the results of all experiments are listed, regardless of the modification states of the fragments.
Experiment series 1
Protein A protein: ARHGEF11
Protein A fragment: 41-126
Protein A site: PDZ
Protein A construct: his6-MBP-TEVsite-PDZ
Protein B protein: SORCS3
Protein B fragment: 1213-1222
Protein B site: PBM
Protein B sequence: TKEIPNCTSV
Protein B construct: biotin-ado-ado-TKEIPNCTSV
Average holdup BI: 0.31
Normalized holdup BI: 0.52
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: DAPF_holdup
Details of affinity fitting: fluorescein + mCherry internal standards + normalization based on CALIP_holdup data + reverse layout
Experimental details: Crude peptide synthesis product. The peptide concentration in the affinity conversion step may differ from reality causing a systematic error in reported affinities.
PUBMED ID of publication: 36115835
Number of measurements: 1
Measured pKd: 4.82