Details of experiments between the fragments O00499~513-593 and Q8IYB3~557-571
Note that the results of all experiments are listed, regardless of the modification states of the fragments.
Experiment series 1
Protein A protein: BIN1
Protein A fragment: 513-593
Protein A site: SH3
Protein A construct: avi(biotin)-his6-MBP-TEVsite-SH3
Protein B protein: SRRM1
Protein B fragment: 557-571
Protein B site: PxxP_5
Protein B sequence: RRRSPSPAPPPRRRR
Protein B construct: Biotinylated 15-mer peptide (crude)
Average holdup BI: 0.9
Holdup BI standard deviation: 0
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: HU (DAPF)
Date of measurement: 2022.06.29.
Number of measurements: 2
Measured pKd: 5.82
Experiment series 2
Protein A protein: BIN1
Protein A fragment: 513-593
Protein A site: SH3
Protein A modification: T532M
Protein A construct: avi(biotin)-his6-MBP-TEVsite-SH3
Protein B protein: SRRM1
Protein B fragment: 557-571
Protein B site: PxxP_5
Protein B sequence: RRRSPSPAPPPRRRR
Protein B construct: Biotinylated 15-mer peptide (crude)
Average holdup BI: 0.9
Holdup BI standard deviation: 0
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: HU (DAPF)
Date of measurement: 2022.06.29.
Number of measurements: 2
Measured pKd: 5.78
Experiment series 3
Protein A protein: BIN1
Protein A fragment: 513-593
Protein A site: SH3
Protein A modification: D537V
Protein A construct: avi(biotin)-his6-MBP-TEVsite-SH3
Protein B protein: SRRM1
Protein B fragment: 557-571
Protein B site: PxxP_5
Protein B sequence: RRRSPSPAPPPRRRR
Protein B construct: Biotinylated 15-mer peptide (crude)
Average holdup BI: 0.71
Holdup BI standard deviation: 0.02
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: HU (DAPF)
Date of measurement: 2022.10.24.
Number of measurements: 2
Measured pKd: 5.21
Experiment series 4
Protein A protein: BIN1
Protein A fragment: 513-593
Protein A site: SH3
Protein A modification: F584S
Protein A construct: avi(biotin)-his6-MBP-TEVsite-SH3
Protein B protein: SRRM1
Protein B fragment: 557-571
Protein B site: PxxP_5
Protein B sequence: RRRSPSPAPPPRRRR
Protein B construct: Biotinylated 15-mer peptide (crude)
Average holdup BI: 0.14
Holdup BI standard deviation: 0.11
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: HU (DAPF)
Date of measurement: 2022.10.24.
Number of measurements: 2
Measured pKd: 3.98
Experiment series 5
Protein A protein: BIN1
Protein A fragment: 513-593
Protein A site: SH3
Protein A modification: P551L
Protein A construct: avi(biotin)-his6-MBP-TEVsite-SH3
Protein B protein: SRRM1
Protein B fragment: 557-571
Protein B site: PxxP_5
Protein B sequence: RRRSPSPAPPPRRRR
Protein B construct: Biotinylated 15-mer peptide (crude)
Average holdup BI: 0.71
Holdup BI standard deviation: 0.03
Immobilized partner concentration in holdup experiment (10-6M): 6
Experiment method: HU (DAPF)
Details of affinity fitting: Bait concentration was adjusted to fit the profile to WT
Date of measurement: 2022.10.24.
Number of measurements: 2
Measured pKd: 5.76
Experiment series 6
Protein A protein: BIN1
Protein A fragment: 513-593
Protein A site: SH3
Protein A modification: Q540H
Protein A construct: avi(biotin)-his6-MBP-TEVsite-SH3
Protein B protein: SRRM1
Protein B fragment: 557-571
Protein B site: PxxP_5
Protein B sequence: RRRSPSPAPPPRRRR
Protein B construct: Biotinylated 15-mer peptide (crude)
Average holdup BI: 0.84
Holdup BI standard deviation: 0
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: HU (DAPF)
Date of measurement: 2022.10.24.
Number of measurements: 2
Measured pKd: 5.54
Experiment series 7
Protein A protein: BIN1
Protein A fragment: 513-593
Protein A site: SH3
Protein A modification: T532M
Protein A construct: avi(biotin)-his6-MBP-TEVsite-SH3
Protein B protein: SRRM1
Protein B fragment: 557-571
Protein B site: PxxP_5
Protein B sequence: RRRSPSPAPPPRRRR
Protein B construct: Biotinylated 15-mer peptide (crude)
Average holdup BI: 0.88
Holdup BI standard deviation: 0
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: HU (DAPF)
Date of measurement: 2022.10.24.
Number of measurements: 2
Measured pKd: 5.72
Experiment series 8
Protein A protein: BIN1
Protein A fragment: 513-593
Protein A site: SH3
Protein A modification: V566M
Protein A construct: avi(biotin)-his6-MBP-TEVsite-SH3
Protein B protein: SRRM1
Protein B fragment: 557-571
Protein B site: PxxP_5
Protein B sequence: RRRSPSPAPPPRRRR
Protein B construct: Biotinylated 15-mer peptide (crude)
Average holdup BI: 0.83
Holdup BI standard deviation: 0
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: HU (DAPF)
Date of measurement: 2022.10.24.
Number of measurements: 2
Measured pKd: 5.53
Experiment series 9
Protein A protein: BIN1
Protein A fragment: 513-593
Protein A site: SH3
Protein A modification: V583I
Protein A construct: avi(biotin)-his6-MBP-TEVsite-SH3
Protein B protein: SRRM1
Protein B fragment: 557-571
Protein B site: PxxP_5
Protein B sequence: RRRSPSPAPPPRRRR
Protein B construct: Biotinylated 15-mer peptide (crude)
Average holdup BI: 0.85
Holdup BI standard deviation: 0.01
Immobilized partner concentration in holdup experiment (10-6M): 9
Experiment method: HU (DAPF)
Details of affinity fitting: Bait concentration was adjusted to fit the profile to WT
Date of measurement: 2022.10.24.
Number of measurements: 2
Measured pKd: 5.99
Experiment series 10
Protein A protein: BIN1
Protein A fragment: 513-593
Protein A site: SH3
Protein A construct: avi(biotin)-his6-MBP-TEVsite-SH3
Protein B protein: SRRM1
Protein B fragment: 557-571
Protein B site: PxxP_5
Protein B sequence: RRRSPSPAPPPRRRR
Protein B construct: Biotinylated 15-mer peptide (crude)
Average holdup BI: 0.88
Holdup BI standard deviation: 0.01
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: HU (DAPF)
Date of measurement: 2022.10.24.
Number of measurements: 2
Measured pKd: 5.7
Experiment series 11
Protein A protein: BIN1
Protein A fragment: 513-593
Protein A site: SH3
Protein A modification: Y531S
Protein A construct: avi(biotin)-his6-MBP-TEVsite-SH3
Protein B protein: SRRM1
Protein B fragment: 557-571
Protein B site: PxxP_5
Protein B sequence: RRRSPSPAPPPRRRR
Protein B construct: Biotinylated 15-mer peptide (crude)
Average holdup BI: 0.72
Holdup BI standard deviation: 0.02
Immobilized partner concentration in holdup experiment (10-6M): 18
Experiment method: HU (DAPF)
Date of measurement: 2022.10.24.
Number of measurements: 2
Measured pKd: 5.24
Experiment series 12
Protein A protein: BIN1
Protein A fragment: 513-593
Protein A site: SH3
Protein A modification: R581C
Protein A construct: avi(biotin)-his6-MBP-TEVsite-SH3
Protein B protein: SRRM1
Protein B fragment: 557-571
Protein B site: PxxP_5
Protein B sequence: RRRSPSPAPPPRRRR
Protein B construct: Biotinylated 15-mer peptide (crude)
Average holdup BI: 0.79
Holdup BI standard deviation: 0.01
Immobilized partner concentration in holdup experiment (10-6M): 6
Experiment method: HU (DAPF)
Details of affinity fitting: Bait concentration was adjusted to fit the profile to WT
Date of measurement: 2022.10.24.
Number of measurements: 2
Measured pKd: 5.98